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<article article-type="research-article" dtd-version="1.2" xml:lang="ru" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><front><journal-meta><journal-id journal-id-type="issn">2658-6533</journal-id><journal-title-group><journal-title>Research Results in Biomedicine</journal-title></journal-title-group><issn pub-type="epub">2658-6533</issn></journal-meta><article-meta><article-id pub-id-type="doi">10.18413/2658-6533-2023-9-4-0-1</article-id><article-id pub-id-type="publisher-id">3243</article-id><article-categories><subj-group subj-group-type="heading"><subject>Genetics</subject></subj-group></article-categories><title-group><article-title>&lt;strong&gt;Prospects for the investigation of retroelements for COVID-19 therapy (review)&lt;/strong&gt;</article-title><trans-title-group xml:lang="en"><trans-title>&lt;strong&gt;Prospects for the investigation of retroelements for COVID-19 therapy (review)&lt;/strong&gt;</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="ru"><surname>Mustafin</surname><given-names>Rustam N.</given-names></name><name xml:lang="en"><surname>Mustafin</surname><given-names>Rustam N.</given-names></name></name-alternatives><email>ruji79@mail.ru</email></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="ru"><surname>Khusnutdinova</surname><given-names>Elza K.</given-names></name><name xml:lang="en"><surname>Khusnutdinova</surname><given-names>Elza K.</given-names></name></name-alternatives><email>elzakh@mail.ru</email></contrib></contrib-group><pub-date pub-type="epub"><year>2023</year></pub-date><volume>9</volume><issue>4</issue><fpage>0</fpage><lpage>0</lpage><self-uri content-type="pdf" xlink:href="/media/medicine/2023/4/НР_Медицина-6-29.pdf" /><abstract xml:lang="ru"><p>Background: The search for methods to detect COVID-19 using genetic advances can become the basis for an effective fight against this viral infection. Targeted therapy using non-coding RNAs meets the conditions of modern personalized medicine, since it will allow diagnosing the molecular mechanisms involved in the pathogenesis of COVID-19 and specifically affecting them. The aim of the study: To determine the most significant epigenetic links in the pathogenesis of COVID-19, the impact on which is promising for the development of targeted therapy. Materials and methods: We used the Scopus, WoS, PubMed databases to analyze the role of miRNAs, long non-coding RNAs, and retroelements in the development of COVID-19. Results: According to the analyzed literature, long noncoding RNAs and pri-miRNAs can be translated into functional peptides that regulate the expression of their own and other genes. Epigenetic factors play an important role in the pathogenesis of COVID-19. This is reflected in changes in the expression of certain non-coding RNAs in patients depending on the severity and nature of the course of the disease. This may be due to the involvement of retroelements in the antiviral response and its ineffectiveness in aging. The result is more severe forms of COVID-19 in elderly and senile people with the development of a cytokine storm, despite the presence of physiological immunodeficiency. Conclusion: Since the features of the expression of specific non-coding RNAs in elderly patients with COVID-19 reflect the regulatory imbalance of transposons, the development of peptides that affect the expression of microRNAs, long non-coding RNAs, and retroelements is promising. This approach could become the basis not only for the effective treatment of age-related patients, but also for prolonging their life due to the effect on the epigenetic mechanisms of aging. To do this, it is necessary to determine the action spectrum of peptides synthesized for the treatment of COVID-19.</p></abstract><trans-abstract xml:lang="en"><p>Background: The search for methods to detect COVID-19 using genetic advances can become the basis for an effective fight against this viral infection. Targeted therapy using non-coding RNAs meets the conditions of modern personalized medicine, since it will allow diagnosing the molecular mechanisms involved in the pathogenesis of COVID-19 and specifically affecting them. The aim of the study: To determine the most significant epigenetic links in the pathogenesis of COVID-19, the impact on which is promising for the development of targeted therapy. Materials and methods: We used the Scopus, WoS, PubMed databases to analyze the role of miRNAs, long non-coding RNAs, and retroelements in the development of COVID-19. Results: According to the analyzed literature, long noncoding RNAs and pri-miRNAs can be translated into functional peptides that regulate the expression of their own and other genes. Epigenetic factors play an important role in the pathogenesis of COVID-19. This is reflected in changes in the expression of certain non-coding RNAs in patients depending on the severity and nature of the course of the disease. This may be due to the involvement of retroelements in the antiviral response and its ineffectiveness in aging. The result is more severe forms of COVID-19 in elderly and senile people with the development of a cytokine storm, despite the presence of physiological immunodeficiency. Conclusion: Since the features of the expression of specific non-coding RNAs in elderly patients with COVID-19 reflect the regulatory imbalance of transposons, the development of peptides that affect the expression of microRNAs, long non-coding RNAs, and retroelements is promising. This approach could become the basis not only for the effective treatment of age-related patients, but also for prolonging their life due to the effect on the epigenetic mechanisms of aging. To do this, it is necessary to determine the action spectrum of peptides synthesized for the treatment of COVID-19.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>viruses</kwd><kwd>long non-coding RNAs</kwd><kwd>miRNAs</kwd><kwd>peptides</kwd><kwd>COVID-19</kwd><kwd>SARS-CoV-2</kwd></kwd-group><kwd-group xml:lang="en"><kwd>viruses</kwd><kwd>long non-coding RNAs</kwd><kwd>miRNAs</kwd><kwd>peptides</kwd><kwd>COVID-19</kwd><kwd>SARS-CoV-2</kwd></kwd-group></article-meta></front><back><ref-list><title>Список литературы</title><ref id="B1"><mixed-citation>Ceraolo C, Giorgi FM. Genomic variance of the 2019-nCoV coronavirus. Journal of Medical Virology. 2020;92(5):522-528. DOI: https://doi.org/10.1002/jmv.25700</mixed-citation></ref><ref id="B2"><mixed-citation>Khailany RA, Safdar M, Ozaslan M. Genomic characterization of a novel SARS-CoV-2. Gene Reports. 2020;19:100682. DOI: https://doi.org/10.1016/j.genrep.2020.100682</mixed-citation></ref><ref id="B3"><mixed-citation>Balestrieri E, Minutolo A, Petrone V, et al. Evidence of the pathogenic HERV-W envelope expression in T-lymphocytes in association with the respiratory outcome of COVID-19 patients. eBioMedicine. 2021;66:103341. DOI: https://doi.org/10.1016/j.ebiom.2021.103341</mixed-citation></ref><ref id="B4"><mixed-citation>Marston JL, Greenig M, Singh M, et al. SARS-CoV-2 infection mediates differential expression of human endogenous retroviruses and long interspersed nuclear elements. JCI insight. 2021;6(24):e147170. DOI: https://doi.org/10.1172/jci.insight.147170</mixed-citation></ref><ref id="B5"><mixed-citation>Lu JY, Shao W, Chang L, et al. Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation. Cell Reports. 2020;30(10):3296-3311.e5. DOI: https://doi.org/10.1016/j.celrep.2020.02.048</mixed-citation></ref><ref id="B6"><mixed-citation>Yin Y, Liu XZ, He X, et al. Exogenous Coronavirus Interacts With Endogenous Retrotransposon in Human Cells. Frontiers in Cellular and Infection Microbiology. 2021;11:609160. DOI: https://doi.org/10.3389/fcimb.2021.609160</mixed-citation></ref><ref id="B7"><mixed-citation>Feschotte C. Transposable elements and the evolution of regulatory networks. Nature Reviews Genetics. 2008;9:397-405. DOI: https://doi.org/10.1038/nrg2337</mixed-citation></ref><ref id="B8"><mixed-citation>Ito J, Sugimoto H, Nakaoka H. Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses. PLoS Genetics. 2017;13:e1006883. DOI: https://doi.org/10.1371/journal.pgen.1006883</mixed-citation></ref><ref id="B9"><mixed-citation>Qin S, Jin P, Zhou X, et al. The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human. PLoS ONE. 2015;10:e0131365. DOI: https://doi.org/10.1371/journal.pone.0131365</mixed-citation></ref><ref id="B10"><mixed-citation>Johnson R, Guigo R. The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs. RNA. 2014;20:959-76. DOI: https://doi.org/10.1261/rna.044560.114</mixed-citation></ref><ref id="B11"><mixed-citation>Abascal F, Tress ML, Valencia A. Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2&amp;alpha; and ZNF451 in mammals. Bioinformatics. 2015;31(14):2257-2261. DOI: https://doi.org/10.1093/bioinformatics/btv132</mixed-citation></ref><ref id="B12"><mixed-citation>Alzohairy AM, Gyulai G, Jansen RK, et al. Transposable elements domesticated and neofunctionalized by eukaryotic genomes. Plasmid. 2013;69(1):1-15. DOI: https://doi.org/10.1016/j.plasmid.2012.08.001</mixed-citation></ref><ref id="B13"><mixed-citation>Wang J, Zhu S, Meng N, et al. ncRNA-Encoded Peptides or Proteins and Cancer. Molecular Therapy. 2019;27(10):1718-1725. DOI: https://doi.org/10.1016/j.ymthe.2019.09.001</mixed-citation></ref><ref id="B14"><mixed-citation>Li M, Schifanella L, Larsen PA. Alu retrotransposons and COVID-19 susceptibility and morbidity. Human Genomics. 2021;15:2. DOI: https://doi.org/10.1186/s40246-020-00299-9</mixed-citation></ref><ref id="B15"><mixed-citation>Senchenkova EY, Russell J, Vital SA, et al. A critical role for both CD40 and VLA5 in angiotensin II-mediated thrombosis and inflammation.&amp;nbsp;FASEB Journal.&amp;nbsp;2018;32(6):3448-56. DOI: https://doi.org/10.1096/fj.201701068R</mixed-citation></ref><ref id="B16"><mixed-citation>Ng KW, Attig J, Bolland W, et al. Tissue-specific and interferon-inducible expression of nonfunctional ACE2 through endogenous retroelement co-option. Nature Genetics. 2020;52:1294-1302. DOI: https://doi.org/10.1038/s41588-020-00732-8</mixed-citation></ref><ref id="B17"><mixed-citation>Ramasamy S, Subbian S. Critical Determinants of Cytokine Storm and Type I Interferon Response in COVID-19 Pathogenesis. Clinical Microbiology Reviews. 2021;34(3):e00299-20. DOI: https://doi.org/10.1128/CMR.00299-20</mixed-citation></ref><ref id="B18"><mixed-citation>Del Sole F, Farvomeni A, Loffredo L, et al. Features of severe COVID-19: A systematic review and meta-analysis. European Journal of Clinical Investigation. 2020;50(10):e13378. DOI: https://doi.org/10.1111/eci.13378</mixed-citation></ref><ref id="B19"><mixed-citation>Levin AT, Hanage WP, Owusu-Boaitey N, et al. Assessing age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications. European Journal of Epidemiology. 2020;35:1123-1138. DOI: https://doi.org/10.1007/s10654-020-00698-1</mixed-citation></ref><ref id="B20"><mixed-citation>Cardelli M. The epigenetic alterations of endogenous retroelements in aging. Mechanisms of Ageing and Development. 2018;174:30-46. DOI: https://doi.org/10.1016/j.mad.2018.02.002</mixed-citation></ref><ref id="B21"><mixed-citation>Feng E, Balint E, Poznanski SM, et al. Aging and Interferons: Impacts on Inflammation and Viral Disease Outcomes. Cells. 2021;10(3):708. DOI: https://doi.org/10.3390/cells10030708</mixed-citation></ref><ref id="B22"><mixed-citation>Li J, Huang DQ, Zou B, et al. Epidemiology of COVID-19: A systematic review and meta-analysis of clinical characrteristics, risk factors, and outcomes. Journal of Medical Virology. 2021;93(3):1449-1458. DOI: https://doi.org/10.1002/jmv.26424</mixed-citation></ref><ref id="B23"><mixed-citation>Peters A, Delhey K, Nakagawa S, et al. Immunosenescence in wild animals: meta-analysis and outlook. Ecology Letters. 2019;22(10):1709-1722. DOI: https://doi.org/10.1111/ele.13343</mixed-citation></ref><ref id="B24"><mixed-citation>Laderoute MP. A new paradigm about HERV-K102 particle production and blocked release to explain cortisol mediated immunosenescence and age-associated risk of chronic disease. Discovery medicine. 2015;20(112):379-391.</mixed-citation></ref><ref id="B25"><mixed-citation>Ray D, Yung R. Immune senescence, epigenetics and autoimmunity. Clinical Immunology. 2018;196:59-63. DOI: https://doi.org/10.1016/j.clim.2018.04.002</mixed-citation></ref><ref id="B26"><mixed-citation>Meftahi GH, Jangravi Z, Sahraei H, et al. The possible pathophysiology mechanism of cytokine storm in elderly adults with COVID-19 infection: the contribution of &amp;ldquo;inflame-aging&amp;rdquo;. Inflammation Research. 2020;69:825-839. DOI: https://doi.org/10.1007/s00011-020-01372-8</mixed-citation></ref><ref id="B27"><mixed-citation>Mulchandani R, Lyngdoh T, Kakkar AK. Deciphering the COVID-19 cytokine storm: Systematic review and meta-analysis. European Journal of Clinical Investigation. 2021;51(1):e13429. DOI: https://doi.org/10.1111/eci.13429</mixed-citation></ref><ref id="B28"><mixed-citation>Mustafin RN, Khusnutdinova EK. The role of transposable elements in endocrine changes during aging. Advances in Gerontology. 2020;33(3):418-428. Russian.</mixed-citation></ref><ref id="B29"><mixed-citation>Huang S, Tao X, Yuan S, et al. Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination. Cell. 2016;166(1):102-114. DOI: https://doi.org/10.1016/j.cell.2016.05.032</mixed-citation></ref><ref id="B30"><mixed-citation>Chuong EB, Elde NC, Feschotte C. Regulatory evolution of innate immunity through co-option of endogenous retroviruses. Science. 2016;351(6277):1083-1087. DOI: https://doi.org/10.1126/science.aad54</mixed-citation></ref><ref id="B31"><mixed-citation>Chuong EB. The placenta goes viral: Retroviruses control gene expression in pregnancy. PLoS Biology. 2018;16:e3000028. DOI: https://doi.org/10.1371/journal.pbio.3000028</mixed-citation></ref><ref id="B32"><mixed-citation>Garcia-Montojo M, Nath A. HERV-W envelope expression in blood leukocytes as a marker of disease severity of COVID-19. eBioMedicine. 2021;67:103363. DOI: https://doi.org/10.1016/j.ebiom.2021.103363</mixed-citation></ref><ref id="B33"><mixed-citation>Yeh EA, Collins A, Cohen ME, et al. Detection of coronavirus in the central nervous system of a child with acute disseminated encephalomyelitis.&amp;nbsp;Pediatrics.&amp;nbsp;2004;113(1):e73-e76. DOI: https://doi.org/10.1542/peds.113.1.e73</mixed-citation></ref><ref id="B34"><mixed-citation>Bellucci G, Rinaldi V, Buscarinu MC, et al. Multiple Sclerosis and SARS-CoV-2: Has the Interplay Started. Frontiers in Immunology. 2021;12:755333. DOI: https://doi.org/10.3389/fimmu.2021.755333</mixed-citation></ref><ref id="B35"><mixed-citation>Durnaoglu S, Lee SK, Ahnn J. Syncytin, envelope protein of human endogenous retrovirus (HERV): no longer &amp;lsquo;fossil&amp;rsquo; in human genome. Animal Cells and Systems. 2022;25(6):358-368. DOI: https://doi.org/10.1080/19768354.2021.2019109</mixed-citation></ref><ref id="B36"><mixed-citation>Kitsou K, Kotanidou A, Paraskevis D, et al. Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients. Microbiology spectrum. 2021;9(2):e026021. DOI: https://doi.org/10.1128/Spectrum.01260-21</mixed-citation></ref><ref id="B37"><mixed-citation>Tovo PA, Garazzino S, Dapra V, et al. COVID-19 in Children: Expressions of Type I/II/III Interferons, TRIM28, SETDB1, and Endogenous Retroviruses in Mild and Severe Cases. International Journal of Molecular Sciences. 2021;22(14):7481. DOI: https://doi.org/10.3390/ijms22147481</mixed-citation></ref><ref id="B38"><mixed-citation>Malfavon-Borja R, Feschotte C. Fighting fire with fire: endogenous retrovirus envelopes as restriction factors. Journal of Virology. 2015;89(80):4047-4050. DOI: https://doi.org/10.1128/JVI.03653-14</mixed-citation></ref><ref id="B39"><mixed-citation>Jayewickreme R, Mao T, Philbrick W, et al. Endogenous Retroviruses Provide Protection Against Vaginal HSV-2 Disease. Frontiers in Immunology. 2022;12:758721. DOI: https://doi.org/10.3389/fimmu.2021.758721</mixed-citation></ref><ref id="B40"><mixed-citation>Zhou B, Qi F, Wu F, et al. Endogenous retrovirus-derived long noncoding RNA enhances innate immune responses via derepressing RELA expression.&amp;nbsp;mBio. 2019;10(4):e00937-19. DOI: https://doi.org/10.1128/mBio.00937-19</mixed-citation></ref><ref id="B41"><mixed-citation>Yap MW, Colbeck E, Ellis SA, et al. Evolution of the retroviral restriction gene Fv1: inhibition of non-MLV retroviruses. PLoS Pathogens. 2014;10:e1003968. DOI: https://doi.org/10.1371/journal.ppat.1003968</mixed-citation></ref><ref id="B42"><mixed-citation>Kapusta A, Kronenberg Z, Lynch VJ, et al. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genetics. 2013;9:e1003470. DOI: https://doi.org/10.1371/journal.pgen.1003470</mixed-citation></ref><ref id="B43"><mixed-citation>Wei G, Qin S, Li W, et al. MDTE DB: a database for microRNAs derived from Transposable element. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2016;13(6):1155-1160. DOI: https://doi.org/10.1109/TCBB.2015.2511767</mixed-citation></ref><ref id="B44"><mixed-citation>Lu D, Chatterjee S, Xiao K, et al. MicroRNAs targeting the SARS-CoV-2 entry receptor ACE2 in cardiomyocytes. Journal of Molecular and Cellular Cardiology. 2020;148:46-49. DOI: https://doi.org/10.1016/j.yjmcc.2020.08.017</mixed-citation></ref><ref id="B45"><mixed-citation>Matarese A, Gambardella J, Sardu C, et al. miR-98 regulates TMPRSS2 expression in human endothelial cells: key implications for COVID-19. Biomedicines. 2020;8(11):462. DOI: https://doi.org/10.3390/biomedicines8110462</mixed-citation></ref><ref id="B46"><mixed-citation>Li C, Hu X, Li L, et al. Differential microRNA expression in the peripheral blood from human patients with COVID-19. Journal of Clinical Laboratory Analysis. 2020;34(10):e23590. DOI: https://doi.org/10.1002/jcla.23590</mixed-citation></ref><ref id="B47"><mixed-citation>Tang H, Gao Y, Li Z, et al. The noncoding and coding transcriptional landscape of the peripheral immune response in patients with COVID-19. Clinical and Translational Science. 2020;10(6):e200. DOI: https://doi.org/10.1002/ctm2.200</mixed-citation></ref><ref id="B48"><mixed-citation>Fernandez-Pato A, Vireda-Berdices A, Resino S, et al. Plasma miRNA profile at COVID-19 onset predicts severity status and mortality. Emerging Microbes and Infections. 2022;11(1):676-688. DOI: https://doi.org/10.1080/22221751.2022.2038021</mixed-citation></ref><ref id="B49"><mixed-citation>Haroun RAH, Osman WH, Amin RE, et al. Circulating plasma miR-155 is a potential biomarker for the detection of SARS-CoV-2 infection. Pathology. 2022;54(1):104-110. DOI: https://doi.org/10.1016/j.pathol.2021.09.006</mixed-citation></ref><ref id="B50"><mixed-citation>Giuliani A, Matacchione G, Ramini D, et al. Circulating miR-320b and miR-483-5p levels are associated with COVID-19 in-hospital mortality. Mechanisms of Ageing and Development. 2022;202:111636. DOI: https://doi.org/10.1016/j.mad.2022.111636</mixed-citation></ref><ref id="B51"><mixed-citation>Chen L, Zhong L. Genomics functional analysis and drug screening of SARS-CoV-2. Genes and Diseases. 2020;7(4):542-550. DOI: https://doi.org/10.1016/j.gendis.2020.04.002</mixed-citation></ref><ref id="B52"><mixed-citation>Zhang L, Richards A, Barrasa MI, et al. Reverse-transcribed SARS-CoV-2 RNA can integrate into the genome of cultured human cells and can be expressed in patient-derived tissues. Proceedings of the National Academy of Sciences of the United States of America. 2021;118(21):e2105968118. DOI: https://doi.org/10.1073/pnas.210596811</mixed-citation></ref><ref id="B53"><mixed-citation>Kazachenka A, Kassiotis G. SARS-CoV-2-Host Chimeric RNA-Sequencing Reads Do Not Necessarily Arise From Virus Integration Into the Host DNA. Frontiers in Microbiology. 2021;12:676693. DOI: https://doi.org/10.3389/fmicb.2021.676693</mixed-citation></ref><ref id="B54"><mixed-citation>Grandi N, Cadeddu M, Blomberg J, et al. Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes. Retrovirology. 2016;13:67. DOI: https://doi.org/10.1186/s12977-016-0301-x</mixed-citation></ref><ref id="B55"><mixed-citation>Geuking MB, Weber J, Dewannieux M, et al. Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration. Science. 2009;323(5912):393-396. DOI: https://doi.org/10.1126/science.1167375</mixed-citation></ref><ref id="B56"><mixed-citation>Shimizu A, Nakatani Y, Nakamura T, et al. Characterisation of Cytoplasmic DNA complementary to non-retroviral RNA viruses in human cells. Scientific Reports. 2014;4:5074. DOI: https://doi.org/10.1038/srep05074</mixed-citation></ref><ref id="B57"><mixed-citation>Austermann-Busch S, Becher P. RNA structural elements determine frequency and sites of nonhomologous recombination in an animal plus-strand RNA virus. Journal of Virology. 2012;86(13):7393-7402. DOI: https://doi.org/10.1128/JVI.00864-12</mixed-citation></ref><ref id="B58"><mixed-citation>Olson KE, Bonizzoni M. Nonretroviral integrated RNA viruses in arthropod vectors: an occasional event or something more. Current Opinion in Insect Science. 2017;22:45-53. DOI: https://doi.org/10.1016/j.cois.2017.05.010</mixed-citation></ref><ref id="B59"><mixed-citation>Katzourakis A, Gifford RJ. Endogenous Viral Elements in Animal Genomes. PLoS Genetics. 2010;6:e1001191. DOI: https://doi.org/10.1371/journal.pgen.1001191</mixed-citation></ref><ref id="B60"><mixed-citation>Taylor DJ, Leach RW, Bruenn J. Filoviruses are ancient and integrated into mammalian genomes. BMC Evolutionary Biology. 2010;10:193. DOI: https://doi.org/10.1186/1471-2148-10-193</mixed-citation></ref><ref id="B61"><mixed-citation>Horie M, Honda T, Suzuki Y, et al. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature. 2010;463:84-87. DOI: https://doi.org/10.1038/nature08695</mixed-citation></ref><ref id="B62"><mixed-citation>Belyi VA, Levine AJ, Skalka AM. Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate. PLoS Pathogens. 2010;6:e1001030. DOI: https://doi.org/10.1371/journal.ppat.1001030</mixed-citation></ref><ref id="B63"><mixed-citation>He WP, Shu CI, Li BA, et al. Human LINE1 endonuclease domain as a putative target of SARS-associated autoantibodies involved in the pathogenesis of severe acute respiratory syndrome. Chinese Medical Journal. 2008;121:608-614.</mixed-citation></ref><ref id="B64"><mixed-citation>Lee JY, Lee WK, Kim DS. Particulate matter-induced hypomethylation of Alu and LINE1 in normal human bronchial epithelial cells and epidermal keratinocytes. Genes and Environment. 2022;44(1):8. DOI: https://doi.org/10.1186/s41021-022-00235-4</mixed-citation></ref><ref id="B65"><mixed-citation>Aune TM, Tossberg JT, Heinrich RM, et al. Alu RNA Structural Features Modulate Immune Cell Activation and A-to-I Editing of Alu RNAs Is Diminished in Human Inflammatory Bowel Disease. Frontiers in Immunology. 2022;13:818023. DOI: https://doi.org/10.3389/fimmu.2022.818023</mixed-citation></ref><ref id="B66"><mixed-citation>Crooke 3rd PS, Tossberg JT, Porter KP, et al. Cutting Edge: Reduced Adenosine-to-Inosine Editing of Endogenous Alu RNAs in Severe COVID-19 Disease. Journal of Immunology. 2021;206(8):1691-1696. DOI: https://doi.org/10.4049/jimmunol.2001428</mixed-citation></ref><ref id="B67"><mixed-citation>Cun Y, Shi L, Kulski JK, et al. Haplotypic Associations and Differentiation of MHC Class II Polymorphic Alu Insertions at Five Loci With HLA-DRB1 Alleles in 12 Minority Ethnic Populations in China. Frontiers in Genetics. 2021;12:636236. DOI: https://doi.org/10.3389/fgene.2021.636236</mixed-citation></ref><ref id="B68"><mixed-citation>Yamamoto N, Ariumi Y, Nishida N, et al. SARS-CoV-2 infections and COVID-19 mortalities strongly correlate with ACE1 I/D genotype. Gene. 2020;758:144944. DOI: https://doi.org/10.1016/j.gene.2020.144944</mixed-citation></ref><ref id="B69"><mixed-citation>Mustafin RN, Khusnutdinova EK. The role of transposons in epigenetic regulation of ontogenesis. Russian Journal of Developmental Biology. 2018;49(2):69-90. Russian. DOI: https://doi.org/10.7868/S0475145018020015</mixed-citation></ref><ref id="B70"><mixed-citation>Shin W, Lee J, Son SY, et al. Human-specific HERV-K insertion causes genomic variations in the human genome. PLoS ONE. 2013;8:e60605. DOI: https://doi.org/10.1371/journal.pone.0060605</mixed-citation></ref><ref id="B71"><mixed-citation>Rishishwar L, Tellez Villa CE, Jordan IK. Transposable element polymorphisms recapitulate human evolution. Mobile DNA. 2015;6:21. DOI: https://doi.org/10.1186/s13100-015-0052-6</mixed-citation></ref><ref id="B72"><mixed-citation>Rishishwar L, Wang L, Wang J, et al. Evidence for positive selection on recent human transposable element insertions. Gene. 2018;675:69-79. DOI: https://doi.org/10.1016/j.gene.2018.06.077</mixed-citation></ref><ref id="B73"><mixed-citation>Demongeot J, Seligmann H. SARS-CoV-2 and miRNA-like inhibition power. Medical Hypotheses. 2020;144:110245. DOI: https://doi.org/10.1016/j.mehy.2020.110245</mixed-citation></ref><ref id="B74"><mixed-citation>Liu Z, Wang J, Ge Y, et al. SARS-CoV-2 encoded microRNAs are involved in the process of virus infection and host immune response. Journal of Biomedical Research. 2021;35(3):216-227. DOI: https://doi.org/10.7555/JBR.35.20200154</mixed-citation></ref><ref id="B75"><mixed-citation>Mishra R, Banerjea AC. SARS-CoV-2 Spike Targets USP33-IRF9 Axis via Exosomal miR-148a to Activate Human Microglia. Frontiers in Immunology. 2021;12:656700. DOI: https://doi.org/10.3389/fimmu.2021.656700</mixed-citation></ref><ref id="B76"><mixed-citation>Rad AH, McLellan AD. Implications of SARS-CoV-2 Mutations for Genomic RNA Structure and Host microRNA Targeting. International Journal of Molecular Sciences. 2020;21(13):4807. DOI: https://doi.org/10.3390/ijms21134807</mixed-citation></ref><ref id="B77"><mixed-citation>Fulzele S, Sahay B, Yusufu I, et al. COVID-19 Virulence in Aged Patients might be Impacted by the Host Cellular MicroRNAs Abundance/Profile. Aging and Disease. 2020;11(3):509-522. DOI: https://doi.org/10.14336/AD.2020.0428</mixed-citation></ref><ref id="B78"><mixed-citation>Kreis NN, Ritter A, Louwen F, et al. A Message from the Human Placenta: Structural and Immunomodulatory Defense Against SARS-CoV-2. Cells. 2020;9(8):1777. DOI: https://doi.org/10.3390/cells9081777</mixed-citation></ref><ref id="B79"><mixed-citation>McDonald JT, Enguita FJ, Taylor D, et al. Role of miR-2392 in driving SARS-CoV-2 infection. Cell Reports. 2021;37(3):109839. DOI: https://doi.org/10.1016/j.celrep.2021.109839</mixed-citation></ref><ref id="B80"><mixed-citation>Howard EW, Yang X. microRNA Regulation in Estrogen Receptor-Positive Breast Cancer and Endocrine Therapy. Biological Procedures Online. 2018;20:17. DOI: https://doi.org/10.1186/s12575-018-0082-9</mixed-citation></ref><ref id="B81"><mixed-citation>Pontecorvi G, Bellenghi M, Ortona E, et al. microRNAs as New Possible Actors in Gender Disparities of Covid-19 Pandemic. Acta Physiologica. 2020;230(1):e13538. DOI: https://doi.org/10.1111/apha.13538</mixed-citation></ref><ref id="B82"><mixed-citation>Khavinson VKh, Solovyov AYu, Shataeva LK. Molecular mechanism of interaction between oligopeptides and double-stranded DNA. Bulletin of Experimental Biology and Medicine. 2006;141(4):443-447. Russian. DOI: https://doi.org/10.1007/s10517-006-0198-9</mixed-citation></ref><ref id="B83"><mixed-citation>Huang JZ, Chen M, Chen D, et al. A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth. Molecular Cell. 2017;68(1):171-184. DOI: https://doi.org/10.1016/j.molcel.2017.09.015</mixed-citation></ref><ref id="B84"><mixed-citation>Fang J, Morsalin S, Rao VN, et al. Decoding of Non-Coding DNA and Non-Coding RNA: Pri-Micro RNA-Encoded Novel Peptides Regulate Migration of Cancer Cells. Journal of Pharmaceutical Sciences and Pharmacology. 2017;3(1):23-27. DOI: https://doi.org/10.1166/jpsp.2017.1070</mixed-citation></ref><ref id="B85"><mixed-citation>Gregory PA, Bert AG, Paterson EL, et al. The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1. Nature Cell Biology. 2008;10:593-601. DOI: https://doi.org/10.1038/ncb1722</mixed-citation></ref><ref id="B86"><mixed-citation>Zuberi M, Mir R, Das J, et al. Expression of serum miR-200a, miR-200b, and miR-200c as candidate biomarkers in epithelial ovarian cancer and their association with clinicopathological features. Clinical and Translational Oncology. 2015;17:779-87. DOI: https://doi.org/10.1007/s12094-015-1303-1</mixed-citation></ref><ref id="B87"><mixed-citation>Kang M, Tang B, Li J, et al. Identification of miPEP133 as a novel tumor-suppressor microprotein encoded by miR-34a pri-miRNA. Molecular Cancer. 2020;19:143. DOI: https://doi.org/10.1186/s12943-020-01248-9</mixed-citation></ref><ref id="B88"><mixed-citation>Niu L, Lou F, Sun Y, et al. A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation. Science advances. 2020;6(21):eaaz2059. DOI: https://doi.org/10.1126/sciadv.aaz2059</mixed-citation></ref><ref id="B89"><mixed-citation>Testa U, Pelosi E, Castelli G, et al. miR-146 and miR-155: Two Key Modulators of Immune Response and Tumor Development. Non-coding RNA. 2017;3(3):22. DOI: https://doi.org/10.3390/ncrna3030022</mixed-citation></ref><ref id="B90"><mixed-citation>Danner J, Pai B, Wankerl L, et al. Peptide-Based Inhibition of miRNA-Guided Gene Silencing. In: Schmidt M, editor. Drug Target miRNA. Methods in Molecular Biology. New York: Humana Press; 2017;1517:199-210. DOI: https://doi.org/10.1007/978-1-4939-6563-2_14</mixed-citation></ref><ref id="B91"><mixed-citation>Suh JS, Lee JY, Choi YS, et al. Peptide-mediated intracellular delivery of miRNA-29b for osteogenic stem cell differentiation. Biomaterials. 2013;34(17):4347-4359. DOI: https://doi.org/10.1016/j.biomaterials.2013.02.039</mixed-citation></ref><ref id="B92"><mixed-citation>Xiao X, Wang X, Wang Y, et al. Multi-Functional Peptide-MicroRNA Nanocomplex for Targeted MicroRNA Delivery and Function Imaging. Chemistry - A European Journal. 2018;24(9):2277-2285. DOI: https://doi.org/10.1002/chem.201705695</mixed-citation></ref><ref id="B93"><mixed-citation>Shachner-Nedherer AL, Werzer O, Kornmueller K, et al. Biological Activity Of miRNA-27a Using Peptid-based Drug Delivery Systems. International Journal of Nanomedicine. 2019;14:7795-7808. DOI: https://doi.org/10.2147/IJN.S208446</mixed-citation></ref><ref id="B94"><mixed-citation>Kim H, Kitamatsu M, Ohtsuki T. Compined apoptic effects of peptide and miRNA in a peptide/miRNA nanocomplex. Journal of Bioscience and Bioengineering. 2019;128(1):110-116. DOI: https://doi.org/10.1016/j.jbiosc.2019.01.003</mixed-citation></ref><ref id="B95"><mixed-citation>Zhuang C, Piao C, Choi M, et al. Delivery of MiRNA-92a Inhibitor Using RP1-Linked Peptide Elicits Anti-Inflammatory Effects in an Acute Lung Injury Model. Journal of Biomedical Nanotechnology. 2021;17(7):1273-1283. DOI: https://doi.org/10.1166/jbn.2021.3102</mixed-citation></ref><ref id="B96"><mixed-citation>Razooky BS, Obermayer B, O&amp;rsquo;May JB, et al. Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAs. Genes. 2017;8(8):206. DOI: https://doi.org/10.3390/genes8080206</mixed-citation></ref><ref id="B97"><mixed-citation>Zhang Y, Zhu M, Zhang X, et al. Micropeptide vsp21 translated by Reovirus circular RNA 000048 attenuates viral replication. International Journal of Biological Macromolecules. 2022;209A:1179-1187. DOI: https://doi.org/10.1016/j.ijbiomac.2022.04.136</mixed-citation></ref></ref-list></back></article>